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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_62909830_62910351_R

Intron Information:

Intron Rank:
153537
Intron Class:
major
Intron Phase:
Intron Coordinates:
62909830 - 62910351
Intron Length:
522

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTCATTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TACACTTTCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.92
0.9
87
30
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
89.4
0.89
0.7
88
29.2
Minor 5ss
37
-1.5
2.8
43.1
43.9
Minor BPS
52.6
0.16
1.8
69.24
42.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030084
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025170
62904104 - 62910512
6409