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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_6292974_6296894_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6292974 - 6296894
Intron Length:
3921

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAAGTTGC
5'SS Class:
major
3'SS Sequence:
GGTTGCTTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
CCTCGTGCCATG
Flanking Amino Acid:
VSTLKYHAGILFTGSGDACA
Intron Amino Acid Position:
292

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1.1
66.5
40.1
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
76.8
0.6
1
69.4
41.7
Minor 5ss
43.5
-0.7
2.8
62.6
42
Minor BPS
28
-1.8
2.2
27.39
36.7

Associated Gene:

Gene:
WDR86
Ensembl Gene ID:
ENSAPLG00000013707
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014270
6291143 - 6308863
17721