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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_62946996_62953563_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
62946996 - 62953563
Intron Length:
6568

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGAGCT
5'SS Class:
strong_major
3'SS Sequence:
CTTTCATTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TATTCTTTCATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.6
0.98
0.8
81.6
30
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
83.3
0.75
0.7
81.6
29.1
Minor 5ss
33.1
-1.9
3.4
48.3
47.4
Minor BPS
68.6
0.67
1.7
84.68
36.4

Associated Gene:

Gene:
GPR141
Ensembl Gene ID:
ENSAPLG00000011472
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011936
62946825 - 62954511
7687