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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_62953697_62953810_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
62953697 - 62953810
Intron Length:
114

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGATAG
5'SS Class:
major
3'SS Sequence:
CTTCTCCTCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCGTTAA
U12 Branch Point Sequence:
TTCTCCTCACAG
Flanking Amino Acid:
ITVYSVAFAGVPFRLHYYVN
Intron Amino Acid Position:
44

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1
64.7
37.9
Major BPS
59.6
0.24
1.3
51.6
43.9
Major PPT
81.7
0.71
0.7
75.9
26.2
Minor 5ss
30.4
-2.2
3.2
37
47.6
Minor BPS
49.4
-0.1
2
60.81
46.6

Associated Gene:

Gene:
GPR141
Ensembl Gene ID:
ENSAPLG00000011472
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011936
62946825 - 62954511
7687