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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_62975833_62976960_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
62975833 - 62976960
Intron Length:
1128

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTTTTTCTG
5'SS Class:
weak_major
3'SS Sequence:
CAGCTTGACCCAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GCCTAAA
U12 Branch Point Sequence:
GATGCCTAAAAG
Flanking Amino Acid:
MLYKEEQNHSSNETLL
Intron Amino Acid Position:
7

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
53.8
0.09
1.2
53
43.6
Major BPS
55
0.12
1.2
57.8
37.4
Major PPT
59
0.2
1
50.1
42.7
Minor 5ss
42.1
-0.9
2.7
51.7
38.9
Minor BPS
48.7
-0.2
2
54.66
45.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007104
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007364
62975815 - 62980535
4721