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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_62977767_62980450_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
62977767 - 62980450
Intron Length:
2684

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTT|GTGCTTCAT
5'SS Class:
weak_major
3'SS Sequence:
ATCCTTCCAGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TATTTCATAATC
Flanking Amino Acid:
ALTTMCCLDMLINLRKNNLC
Intron Amino Acid Position:
275

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
52
0.05
1.1
52.7
39.6
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
71.6
0.49
0.9
67.2
33.3
Minor 5ss
32
-2.1
3.3
46.4
43.3
Minor BPS
67.2
0.52
1.5
76.23
33.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007104
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007364
62975815 - 62980535
4721