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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_63011547_63012813_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
63011547 - 63012813
Intron Length:
1267

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
CATCTCGCTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTTAT
U12 Branch Point Sequence:
TTTTCTGCATCT
Flanking Amino Acid:
SEDDVLHFAVAEANSIETLQ
Intron Amino Acid Position:
77

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.93
0.8
83.5
35
Major BPS
71.3
0.53
1
61.3
37
Major PPT
73.7
0.53
0.9
69.6
36.4
Minor 5ss
39.5
-1.2
2.8
48.4
41.7
Minor BPS
48.7
-0
2.4
79.81
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019068
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045196
63010452 - 63016532
6081