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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_63013928_63016250_F

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
63013928 - 63016250
Intron Length:
2323

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAT|GCCCATGAT
5'SS Class:
weak_major
3'SS Sequence:
TTAACTTATTGAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
AAGATTTTAACT
Flanking Amino Acid:
FYYTSMVSLNFSFVILIPFK
Intron Amino Acid Position:
166

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
53.6
0.09
1.4
59.7
41.7
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
54.1
0.09
1.7
66.4
44
Minor 5ss
20.2
-3.4
4.1
35
41.8
Minor BPS
63.9
0.51
1.3
71.76
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019068
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045196
63010452 - 63016532
6081