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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_630274_632656_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
630274 - 632656
Intron Length:
2383

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGGAGC
5'SS Class:
major
3'SS Sequence:
CTTCAAATTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCAAAT
U12 Branch Point Sequence:
CTCCCTTCAAAT
Flanking Amino Acid:
GEWHWGKPHGKGTVKWRDGR
Intron Amino Acid Position:
380

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
70.6
39.9
Major BPS
77.3
0.68
1
81.5
27
Major PPT
74.3
0.55
0.9
66.8
37.9
Minor 5ss
34.3
-1.8
3.2
43.3
38.2
Minor BPS
50.5
0.09
1.7
66.71
43.9

Associated Gene:

Gene:
ALS2CL
Ensembl Gene ID:
ENSAPLG00000005280
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005504
616350 - 658098
41749
ENSAPLT00000038866
616350 - 640574
24225
ENSAPLT00000022344
616350 - 641213
24864
ENSAPLT00000019967
616350 - 658098
41749