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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_6304219_6305647_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6304219 - 6305647
Intron Length:
1429

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGGTTCC
5'SS Class:
major
3'SS Sequence:
TTATTCTTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TTATTCTTGACA
Flanking Amino Acid:
IYRGHTSIVNRILVAKDYLF
Intron Amino Acid Position:
102

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1.2
67.9
38.3
Major BPS
84.4
0.85
1
84
34.5
Major PPT
79.4
0.66
1
76.5
37.4
Minor 5ss
36.4
-1.5
2.9
45.4
42.7
Minor BPS
79.1
0.91
1
82.78
31.1

Associated Gene:

Gene:
WDR86
Ensembl Gene ID:
ENSAPLG00000013707
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014270
6291143 - 6308863
17721