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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_63045452_63073977_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
63045452 - 63073977
Intron Length:
28526

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAGGTGGT
5'SS Class:
major
3'SS Sequence:
TGCTTTGTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TCATCTAAAATA
Flanking Amino Acid:
RRGRRSSPARMESWVGVYTV
Intron Amino Acid Position:
205

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1.1
69.9
41.1
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
82.5
0.73
0.9
80.2
37.3
Minor 5ss
34.7
-1.7
3.6
48.4
42.3
Minor BPS
48.3
-0.1
1.9
60.45
40.2

Associated Gene:

Gene:
EPDR1
Ensembl Gene ID:
ENSAPLG00000031104
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048474
63044773 - 63074168
29396