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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_6305790_6308555_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6305790 - 6308555
Intron Length:
2766

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGCGG
5'SS Class:
major
3'SS Sequence:
TTCCTGTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTGAAT
U12 Branch Point Sequence:
ATGTCTGTACCT
Flanking Amino Acid:
ADSQCHGHFQGHESYITFCH
Intron Amino Acid Position:
55

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1.1
55.2
49
Major BPS
56.8
0.17
1.6
69.7
44.2
Major PPT
80
0.68
0.8
72.7
37.5
Minor 5ss
28.8
-2.4
3.4
38.1
46.9
Minor BPS
49.5
0.04
2.2
73.52
43.9

Associated Gene:

Gene:
WDR86
Ensembl Gene ID:
ENSAPLG00000013707
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014270
6291143 - 6308863
17721