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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_63145135_63146492_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
63145135 - 63146492
Intron Length:
1358

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTGAGTAGT
5'SS Class:
major
3'SS Sequence:
CTGTCTCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
CTAATCTTAACT
Flanking Amino Acid:
CRLRHWWAIAFTTAVTSAFL
Intron Amino Acid Position:
128

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.1
71.2
40.3
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
83.4
0.75
0.8
80.8
31.2
Minor 5ss
34.9
-1.7
2.9
52.3
44.3
Minor BPS
72.7
0.79
1.3
81.22
40.2

Associated Gene:

Gene:
STARD3NL
Ensembl Gene ID:
ENSAPLG00000014212
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014843
63139544 - 63153026
13483