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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_63149308_63151672_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
63149308 - 63151672
Intron Length:
2365

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTCAA
5'SS Class:
strong_major
3'SS Sequence:
ATTCATTATACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTAAT
U12 Branch Point Sequence:
CATTCATTATAC
Flanking Amino Acid:
ERTTSNGSSKDITTCYRFRR
Intron Amino Acid Position:
724

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
76.1
35
Major BPS
81.8
0.79
1.1
84
34.5
Major PPT
75.9
0.58
1
69.6
39.9
Minor 5ss
33.6
-1.9
2.9
41.3
45
Minor BPS
49
-0
2
62.27
42.5

Associated Gene:

Gene:
MLH1
Ensembl Gene ID:
ENSAPLG00000014436
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024586
63149195 - 63170820
21626