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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_63149923_63151672_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
63149923 - 63151672
Intron Length:
1750

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTCAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTCATCCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
GTTGTCTTAATG
Flanking Amino Acid:
ERTTSNGSSKDGALRP*
Intron Amino Acid Position:
724

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
76.1
35
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
73.7
0.53
0.8
66.5
34.6
Minor 5ss
33.6
-1.9
2.9
41.3
45
Minor BPS
66.8
0.39
1.5
67.31
41

Associated Gene:

Gene:
MLH1
Ensembl Gene ID:
ENSAPLG00000014436
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015117
63149903 - 63170820
20918