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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_63157772_63158567_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
63157772 - 63158567
Intron Length:
796

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGAAC
5'SS Class:
strong_major
3'SS Sequence:
AACTTCAATTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTTTTTAAAC
Flanking Amino Acid:
KLYLLNTTKLSQELFYQILI
Intron Amino Acid Position:
554

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
1
75.4
34.2
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
63.7
0.31
1
60.6
39.6
Minor 5ss
31.9
-2.1
3.2
42.1
45
Minor BPS
76.4
0.81
1.2
82.98
29.8

Associated Gene:

Gene:
MLH1
Ensembl Gene ID:
ENSAPLG00000014436
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024586
63149195 - 63170820
21626
ENSAPLT00000015117
63149903 - 63170820
20918
ENSAPLT00000031053
63154986 - 63170820
15835