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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_63160479_63161260_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
63160479 - 63161260
Intron Length:
782

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGTCTC
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTATTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATAAT
U12 Branch Point Sequence:
TGTTTCTGTATT
Flanking Amino Acid:
RHLFPEKALPRKRPREDTDI
Intron Amino Acid Position:
468

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.5
0.86
0.9
76.5
39.2
Major BPS
79
0.72
1
78.4
31.2
Major PPT
82.9
0.74
0.9
77.4
35.6
Minor 5ss
39.3
-1.2
3
54.6
42.6
Minor BPS
56.3
0.28
1.8
77.06
39.7

Associated Gene:

Gene:
MLH1
Ensembl Gene ID:
ENSAPLG00000014436
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024586
63149195 - 63170820
21626
ENSAPLT00000015117
63149903 - 63170820
20918
ENSAPLT00000031053
63154986 - 63170820
15835