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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_63161635_63162339_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
63161635 - 63162339
Intron Length:
705

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAATA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTGAATGAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGAAT
U12 Branch Point Sequence:
CATGTTTGAATG
Flanking Amino Acid:
SNSSRMYFTQTLLPGAECSS
Intron Amino Acid Position:
344

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.7
85.9
23.8
Major BPS
74.6
0.61
1.4
84
34.5
Major PPT
61.6
0.26
1.2
61.8
42.8
Minor 5ss
31.6
-2.1
3
39.7
45.8
Minor BPS
47.3
-0.3
1.6
48.08
40.2

Associated Gene:

Gene:
MLH1
Ensembl Gene ID:
ENSAPLG00000014436
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024586
63149195 - 63170820
21626
ENSAPLT00000015117
63149903 - 63170820
20918
ENSAPLT00000031053
63154986 - 63170820
15835