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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_63163520_63164075_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
63163520 - 63164075
Intron Length:
556

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACC|GTAAGTTAA
5'SS Class:
major
3'SS Sequence:
TGTTCTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAC
U12 Branch Point Sequence:
ATTTTTGGAAAA
Flanking Amino Acid:
KKSVFLLFINHRLVESTALR
Intron Amino Acid Position:
261

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.5
1.3
71.5
36.8
Major BPS
82.3
0.8
0.8
83.6
25.8
Major PPT
87.5
0.84
0.7
85.1
29.7
Minor 5ss
41.4
-1
2.8
53.7
43.8
Minor BPS
46.2
-0.2
2.1
63.24
36.9

Associated Gene:

Gene:
MLH1
Ensembl Gene ID:
ENSAPLG00000014436
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015117
63149903 - 63170820
20918
ENSAPLT00000031053
63154986 - 63170820
15835
ENSAPLT00000024586
63149195 - 63170820
21626