Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_63164189_63165579_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

63164189 - 63165579

Intron Length:

1391

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATGTTGG

5'SS Class:

strong_major

3'SS Sequence:

AAACTGTCAATAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

CTGTCAA

U12 Branch Point Sequence:

TTTCTGTCAAAC

Flanking Amino Acid:

IRSIFGNAVSRELIEVGCED

Intron Amino Acid Position:

223

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.9

0.85

0.9

71.4

41.2

Major BPS

63.3

0.33

1.2

39.8

Major PPT

54.4

0.1

48.1

39.4

Minor 5ss

45.7

-0.5

2.5

58.3

46.4

Minor BPS

46.5

-0.2

2.2

65.16

40.1

Associated Gene:

Gene:

MLH1

Ensembl Gene ID:

ENSAPLG00000014436

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031053

63154986 - 63170820

15835

ENSAPLT00000024586

63149195 - 63170820

21626

ENSAPLT00000015117

63149903 - 63170820

20918