About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_63167356_63168244_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
63167356 - 63168244
Intron Length:
889

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGGTTT
5'SS Class:
strong_major
3'SS Sequence:
ATCTTCTCTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TGTTTTTTAATT
Flanking Amino Acid:
CAGNQGTQIMVEDLFYNINT
Intron Amino Acid Position:
149

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.83
0.9
81.3
33.2
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
79
0.65
0.8
74.2
30.2
Minor 5ss
42.8
-0.8
3.4
61.3
44.6
Minor BPS
79
0.99
1
87.87
31.1

Associated Gene:

Gene:
MLH1
Ensembl Gene ID:
ENSAPLG00000014436
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031053
63154986 - 63170820
15835
ENSAPLT00000024586
63149195 - 63170820
21626
ENSAPLT00000015117
63149903 - 63170820
20918