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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_63168318_63169386_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
63168318 - 63169386
Intron Length:
1069

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCTAG
5'SS Class:
strong_major
3'SS Sequence:
ATTTTCTGCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATTTTTATTT
Flanking Amino Acid:
TKTADAKCAYRASYSDGKIK
Intron Amino Acid Position:
124

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
67.6
40.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
72.6
0.51
0.9
66.4
40.1
Minor 5ss
49.3
-0
2.5
63.6
48.1
Minor BPS
64.7
0.54
1.5
79.8
36.8

Associated Gene:

Gene:
MLH1
Ensembl Gene ID:
ENSAPLG00000014436
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031053
63154986 - 63170820
15835
ENSAPLT00000024586
63149195 - 63170820
21626
ENSAPLT00000015117
63149903 - 63170820
20918