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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_63170103_63170235_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
63170103 - 63170235
Intron Length:
133

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTGAGTACC
5'SS Class:
major
3'SS Sequence:
CCCTGTTATATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
ATTTTCTTATCC
Flanking Amino Acid:
QVQDNGCGIRKEDLNVVCER
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1
68.6
36.4
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
69.5
0.44
0.9
64.2
35.8
Minor 5ss
32.8
-2
2.6
34.8
34.3
Minor BPS
72.2
0.68
1.5
80.35
34.3

Associated Gene:

Gene:
MLH1
Ensembl Gene ID:
ENSAPLG00000014436
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024586
63149195 - 63170820
21626
ENSAPLT00000015117
63149903 - 63170820
20918
ENSAPLT00000031053
63154986 - 63170820
15835