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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_63170327_63170713_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
63170327 - 63170713
Intron Length:
387

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGGCGC
5'SS Class:
major
3'SS Sequence:
TCGCTTTCCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTAGAA
U12 Branch Point Sequence:
TGTTCTATACTG
Flanking Amino Acid:
ANAIKEMIENCLDAKSTNIQ
Intron Amino Acid Position:
36

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1
56.6
42.5
Major BPS
57.4
0.18
1.1
54.9
40.8
Major PPT
77
0.61
0.8
71.8
32.8
Minor 5ss
25.8
-2.8
3.1
29.7
37.2
Minor BPS
49.3
-0.1
1.9
60.65
41.7

Associated Gene:

Gene:
MLH1
Ensembl Gene ID:
ENSAPLG00000014436
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031053
63154986 - 63170820
15835
ENSAPLT00000024586
63149195 - 63170820
21626
ENSAPLT00000015117
63149903 - 63170820
20918