About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_63176469_63176905_R


Intron Information:

Intron Rank:
21

Intron Class:
minor

Intron Phase:
1

Intron Coordinates:
63176469 - 63176905

Intron Length:
437

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
ACT|GTATCCTCT

5'SS Class:
strong_minor

3'SS Sequence:
AACAATACTTCAG|A

3'SS Class:
minor_BPS

U2 Branch Point Sequence:
TTTTGAC

U12 Branch Point Sequence:
TTTGACTTAACA

Flanking Amino Acid:
PPKNRKGDENYMEFLEVLTE

Intron Amino Acid Position:
932

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
49.1
-0
1.3
49.2
42.1

Major BPS
86.5
0.91
0.8
77.4
37.4

Major PPT
62.2
0.27
1
56.1
43.3

Minor 5ss
88.5
1.3
1.2
92.4
23.7

Minor BPS
74.9
0.78
1.6
84.46
35.5

Associated Gene:

Gene:

Ensembl Gene ID:

Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

63176377 - 63240865
64489

63176377 - 63189183
12807

63176377 - 63239146
62770