About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_63188395_63189096_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
63188395 - 63189096
Intron Length:
702

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAAAGAA
5'SS Class:
major
3'SS Sequence:
ATCATTTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
ATGTTTCTAATG
Flanking Amino Acid:
LEKKMLCHTQFENDISAFTY
Intron Amino Acid Position:
18

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
0.9
69.8
29.2
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
82.4
0.73
0.8
76.8
36.6
Minor 5ss
23.6
-3
3.1
28.7
43.6
Minor BPS
51.1
-0.1
1.7
57.44
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015132
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033224
63176377 - 63189183
12807