About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_63189898_63190039_R


Intron Information:

Intron Rank:
17

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
63189898 - 63190039

Intron Length:
142

Sequence Information:

Terminal Dinucleotides:
GC-AG

5'SS Sequence:
AAG|GCAAGGACA

5'SS Class:
strong_major

3'SS Sequence:
CATTTTTGGATAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TTATAAA

U12 Branch Point Sequence:
ATACTTATAAAT

Flanking Amino Acid:
LLPFLLRQHKVWRKCKMRIF

Intron Amino Acid Position:
747

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
94.7
1.06
0.8
83.5
27.7

Major BPS
78.6
0.71
1
78.6
31

Major PPT
66.7
0.38
1.1
64.8
41.1

Minor 5ss
22.2
-3.2
3.8
31.6
42.4

Minor BPS
48.7
-0
1.6
66.9
37.1

Associated Gene:

Gene:

Ensembl Gene ID:

Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

63176377 - 63240865
64489

63176377 - 63239146
62770