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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_63202871_63204239_R

Intron Information:

Intron Rank:
10
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
63202871 - 63204239
Intron Length:
1369

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGATAA
5'SS Class:
major
3'SS Sequence:
TGAATTGAACTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AATTGAA
U12 Branch Point Sequence:
TATACTTGAATT
Flanking Amino Acid:
ARDGIVPFIQVFGHGKANGE
Intron Amino Acid Position:
421

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
0.9
72.8
26.8
Major BPS
70.6
0.51
0.9
61.4
36.2
Major PPT
52
0.05
1.1
44.9
45.7
Minor 5ss
33.5
-1.9
3.1
38.4
40.9
Minor BPS
65
0.55
1.4
78.99
37

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000015132
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045141
63176377 - 63240865
64489
ENSAPLT00000015887
63176377 - 63239146
62770