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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_63293819_63352600_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
63293819 - 63352600
Intron Length:
58782

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGCTCC
5'SS Class:
major
3'SS Sequence:
AAATGTTTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
TCTTTTGTAAAT
Flanking Amino Acid:
LTRQVAVKTLGIGKNVICDR
Intron Amino Acid Position:
85

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1
64.6
36.2
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
74.4
0.55
1
70.2
44.7
Minor 5ss
39.8
-1.1
2.9
48.2
42.1
Minor BPS
53.4
0.19
2.1
75.95
41.3

Associated Gene:

Gene:
GFOD1
Ensembl Gene ID:
ENSAPLG00000012346
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012847
63293566 - 63353520
59955