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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_6333804_6334231_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6333804 - 6334231
Intron Length:
428

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTCCCCACCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAC
U12 Branch Point Sequence:
CGCTCCTCACCA
Flanking Amino Acid:
MSQYSGKITFYEGKCFT
Intron Amino Acid Position:
8

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
82.1
24.6
Major BPS
72.4
0.56
1
73.5
32.5
Major PPT
71.4
0.48
0.8
62.6
33.1
Minor 5ss
31.3
-2.1
2.7
33.5
35.5
Minor BPS
49.7
-0
1.9
60.01
45.8

Associated Gene:

Gene:
CRYGN
Ensembl Gene ID:
ENSAPLG00000013788
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014357
6324839 - 6334252
9414