About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_633940_635738_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
633940 - 635738
Intron Length:
1799

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAATTTT
5'SS Class:
strong_major
3'SS Sequence:
CCTTTTATTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TTTACATCAACA
Flanking Amino Acid:
LFDDVLVLIQGNSFQSFDLK
Intron Amino Acid Position:
267

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.84
0.8
86.3
23.9
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
85
0.79
0.8
77.1
35.8
Minor 5ss
40
-1.1
3.1
57.8
46.8
Minor BPS
61.9
0.37
1.9
78.33
37.5

Associated Gene:

Gene:
ALS2CL
Ensembl Gene ID:
ENSAPLG00000005280
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005504
616350 - 658098
41749
ENSAPLT00000038866
616350 - 640574
24225
ENSAPLT00000022344
616350 - 641213
24864
ENSAPLT00000019967
616350 - 658098
41749