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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_63403823_63406645_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
63403823 - 63406645
Intron Length:
2823

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTGTCTCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATATATTT
Flanking Amino Acid:
PWTRLTAADKAAIRKELNEF
Intron Amino Acid Position:
106

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
80.4
26.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
86
0.81
0.8
80.4
31.7
Minor 5ss
33.7
-1.9
3.2
40.3
40.1
Minor BPS
48
-0
2
72.17
39

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021403
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028083
63401575 - 63423187
21613