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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_6340660_6347639_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6340660 - 6347639
Intron Length:
6980

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACAGAT
5'SS Class:
major
3'SS Sequence:
TCTCTCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TTCCTCTTACCT
Flanking Amino Acid:
FLESSAKENQTAVDVFKRII
Intron Amino Acid Position:
155

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1.1
75.1
35.1
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
88.8
0.87
0.6
84
23.9
Minor 5ss
37.6
-1.4
3.5
55.7
48.5
Minor BPS
65
0.55
1.6
80.65
41.4

Associated Gene:

Gene:
RHEB
Ensembl Gene ID:
ENSAPLG00000022733
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026064
6340567 - 6379514
38948