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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_63406787_63415987_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
63406787 - 63415987
Intron Length:
9201

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGAGC
5'SS Class:
strong_major
3'SS Sequence:
CTCAAACCTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
TCTTCCTCAAAC
Flanking Amino Acid:
REIKRRLTRKLSQRPTVEEL
Intron Amino Acid Position:
59

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.9
73
38.2
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
67.4
0.39
0.9
58.8
36.9
Minor 5ss
27.2
-2.6
3
33.9
41.8
Minor BPS
67.7
0.54
1.7
76.17
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021403
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028083
63401575 - 63423187
21613