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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_63416050_63420480_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
63416050 - 63420480
Intron Length:
4431

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTAAGTCCT
5'SS Class:
major
3'SS Sequence:
AAATTTTTTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
TTCTTGTAAATT
Flanking Amino Acid:
EELEQRNILKPRNEQEEQEE
Intron Amino Acid Position:
38

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1.3
75.3
40.8
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
79.6
0.67
0.9
73.1
41
Minor 5ss
38.2
-1.3
3
51.1
38.4
Minor BPS
49.5
0.04
2.3
74.4
43.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021403
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028083
63401575 - 63423187
21613