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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_63420580_63423174_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
63420580 - 63423174
Intron Length:
2595

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GAG|GCCCTACTG
5'SS Class:
major
3'SS Sequence:
GTGAGCTGAGAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCTTAAA
U12 Branch Point Sequence:
TAACTCTTAAAG
Flanking Amino Acid:
AFIRGCDMVQKLIS
Intron Amino Acid Position:
5

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.8
0.28
1.3
50.7
45.2
Major BPS
77.8
0.69
1
78.2
31.8
Major PPT
46.9
-0.1
1.2
42.2
42.2
Minor 5ss
19.7
-3.5
3.8
30.9
42.4
Minor BPS
59.5
0.16
1.5
60.42
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021403
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028083
63401575 - 63423187
21613