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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_6347722_6348253_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6347722 - 6348253
Intron Length:
532

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTATGTGAA
5'SS Class:
major
3'SS Sequence:
TCTTTTCTATCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
TCTTTTCTATCA
Flanking Amino Acid:
VGNKKDLHMERVISYEEGKA
Intron Amino Acid Position:
127

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
70.6
35.2
Major BPS
78.6
0.71
1
78.6
31
Major PPT
85.4
0.8
0.8
85.8
27.2
Minor 5ss
38.6
-1.3
3.1
48.8
47.3
Minor BPS
50
-0
1.9
66.93
40.1

Associated Gene:

Gene:
RHEB
Ensembl Gene ID:
ENSAPLG00000022733
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026064
6340567 - 6379514
38948