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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_6348302_6348401_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6348302 - 6348401
Intron Length:
100

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTAGT
5'SS Class:
major
3'SS Sequence:
CTTTCTTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
AAGTTCTGAACT
Flanking Amino Acid:
GKLLDMVGKVQIPIMLVGNK
Intron Amino Acid Position:
111

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1
75.9
39.9
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
87.5
0.84
0.7
83
25.4
Minor 5ss
39.6
-1.2
2.9
57.1
41.1
Minor BPS
66.1
0.58
1.4
76.39
39.8

Associated Gene:

Gene:
RHEB
Ensembl Gene ID:
ENSAPLG00000022733
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026064
6340567 - 6379514
38948