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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_63483864_63488546_R

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
63483864 - 63488546
Intron Length:
4683

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
ATA|GCAGGACTG
5'SS Class:
weak_major
3'SS Sequence:
GCAGTTCGCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCAGAA
U12 Branch Point Sequence:
CGGCAGTTAGCG
Flanking Amino Acid:
DKGTGNTIQNSRASRKGGEQ
Intron Amino Acid Position:
102

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59
0.21
1.3
54.5
42.3
Major BPS
48.9
-0
1.2
46.7
38.9
Major PPT
60.1
0.23
1
53.7
41.3
Minor 5ss
25.7
-2.8
4.2
40
41.1
Minor BPS
37.9
-1
2.2
38.45
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031106
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028009
63483796 - 63540116
56321