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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_6348459_6352556_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6348459 - 6352556
Intron Length:
4098

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATAAAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTATTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTCAT
U12 Branch Point Sequence:
ATCCCTTTATTT
Flanking Amino Acid:
ILVYSVTSIKSFEVIKVIHG
Intron Amino Acid Position:
92

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
0.9
78.8
29.6
Major BPS
78.6
0.71
1
79.6
32.9
Major PPT
89.2
0.88
0.7
84.2
30.3
Minor 5ss
32.9
-2
2.9
40.3
45.4
Minor BPS
57.3
0.31
1.6
71.31
40.3

Associated Gene:

Gene:
RHEB
Ensembl Gene ID:
ENSAPLG00000022733
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026064
6340567 - 6379514
38948