About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_63488571_63488651_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
63488571 - 63488651
Intron Length:
81

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
GTTGTAACATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATTGTTGTAACA
Flanking Amino Acid:
RGVLKEIFDKGTGNTIQNSR
Intron Amino Acid Position:
94

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.5
1.1
0.7
87.9
25.6
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
60.4
0.23
1
58
42.2
Minor 5ss
35.3
-1.7
3.2
50.4
46
Minor BPS
51.4
0.04
2.1
68.42
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031106
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028009
63483796 - 63540116
56321