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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_63488733_63538176_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
63488733 - 63538176
Intron Length:
49444

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATACTC
5'SS Class:
strong_major
3'SS Sequence:
CCTCTGCTTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TTTCTATTAATA
Flanking Amino Acid:
KSEKFKHTSAALERKISMRQ
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
71.8
38.2
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
78.7
0.65
0.8
71.5
33
Minor 5ss
36.6
-1.5
3.2
51.3
45.2
Minor BPS
66.7
0.52
1.5
77.76
32.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031106
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028009
63483796 - 63540116
56321