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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_6352640_6355460_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6352640 - 6355460
Intron Length:
2821

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
ATTCTTTCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATAAAT
U12 Branch Point Sequence:
GCAACTATAAAT
Flanking Amino Acid:
HLQLVDTAGQDEYSIFPQTY
Intron Amino Acid Position:
65

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
89.8
22.2
Major BPS
74.5
0.61
1
79.6
29.1
Major PPT
86.2
0.82
0.7
80.7
30.7
Minor 5ss
39.1
-1.2
2.8
51.7
39.1
Minor BPS
47.4
-0.1
1.7
60.87
42.1

Associated Gene:

Gene:
RHEB
Ensembl Gene ID:
ENSAPLG00000022733
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026064
6340567 - 6379514
38948