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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_6355529_6361255_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6355529 - 6361255
Intron Length:
5727

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
TTGTTTCTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TAATTCTGAAAT
Flanking Amino Acid:
VDSYDPTIENTFTKLITVNG
Intron Amino Acid Position:
42

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
77.3
32.8
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
88.5
0.87
0.8
81.2
36.5
Minor 5ss
37.2
-1.4
2.8
47.9
41.8
Minor BPS
62.1
0.46
1.5
76.51
39.1

Associated Gene:

Gene:
RHEB
Ensembl Gene ID:
ENSAPLG00000022733
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026064
6340567 - 6379514
38948