About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_63745452_63745590_R

Intron Information:

Intron Rank:
134090
Intron Class:
major
Intron Phase:
Intron Coordinates:
63745452 - 63745590
Intron Length:
139

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCTCGT
5'SS Class:
major
3'SS Sequence:
TCCTTCTCGTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGCTCAT
U12 Branch Point Sequence:
CTCATGGTACTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.2
0.5
1.2
63.8
47.8
Major BPS
70.9
0.52
1.1
71.4
36.6
Major PPT
65
0.34
1.1
71.4
33.4
Minor 5ss
40.4
-1.1
3.2
59.7
44.7
Minor BPS
35
-1
2.5
50.63
44.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019417
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036164
63744830 - 63746096
1267