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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_63784549_63802212_R

Intron Information:

Intron Rank:
144435
Intron Class:
major
Intron Phase:
Intron Coordinates:
63784549 - 63802212
Intron Length:
17664

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTCCA
5'SS Class:
strong_major
3'SS Sequence:
CTTGCTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTTAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.4
1.05
0.8
80.7
33.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
86.5
0.82
0.8
84.1
30.8
Minor 5ss
34.5
-1.8
2.8
42.4
44.3
Minor BPS
75.7
0.8
1.4
82.86
31

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024992
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017569
63783025 - 63805265
22241