About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_63861163_63862501_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
63861163 - 63862501
Intron Length:
1339

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TATTTTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TATTTCTTATTT
Flanking Amino Acid:
QQFVDSRKIKRLEAIGNSIK
Intron Amino Acid Position:
158

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.4
1.02
0.7
87.4
21.4
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
92.6
0.96
0.7
88.6
28.1
Minor 5ss
39.3
-1.2
2.9
52
45.2
Minor BPS
70.7
0.73
1.5
84.59
36.2

Associated Gene:

Gene:
EDN1
Ensembl Gene ID:
ENSAPLG00000031009
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023282
63859859 - 63864507
4649