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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_63862610_63862875_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
63862610 - 63862875
Intron Length:
266

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGCGTTTA
5'SS Class:
major
3'SS Sequence:
TGACTTCTAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
CTTTTTTTAACA
Flanking Amino Acid:
LNFCQTGKDLWAQSTVEMTL
Intron Amino Acid Position:
122

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1
73
34
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
66.9
0.38
1
62.7
38.3
Minor 5ss
37.4
-1.4
3.1
45.8
44.7
Minor BPS
79.3
0.92
1.1
82.25
33.1

Associated Gene:

Gene:
EDN1
Ensembl Gene ID:
ENSAPLG00000031009
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023282
63859859 - 63864507
4649