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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_63864128_63864250_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
63864128 - 63864250
Intron Length:
123

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TCTCCTTCCTTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGCTGAA
U12 Branch Point Sequence:
CCGCGCTGAGCC
Flanking Amino Acid:
FVLCPGLLPAAPGAEVGSAP
Intron Amino Acid Position:
22

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
75
35.3
Major BPS
49.7
-0
1.3
43.1
41.8
Major PPT
77.8
0.63
0.7
77
25
Minor 5ss
31.6
-2.1
3.3
41.1
45.4
Minor BPS
40.8
-0.7
2
44.23
43.7

Associated Gene:

Gene:
EDN1
Ensembl Gene ID:
ENSAPLG00000031009
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023282
63859859 - 63864507
4649