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Intron Name: Anas_platyrhynchos_platyrhynchos_2_63896646_63899514_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

63896646 - 63899514

Intron Length:

2869

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAATTCT

5'SS Class:

strong_major

3'SS Sequence:

CTTTTCTTTCTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCTACAT

U12 Branch Point Sequence:

CTATCTACATGT

Flanking Amino Acid:

RASPAEPCLKVF*

Intron Amino Acid Position:

2639

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.5

0.79

0.9

79.9

28.5

Major BPS

70.2

0.5

1.1

77.2

Major PPT

87.5

0.84

0.6

81.1

Minor 5ss

36.7

-1.5

50.4

Minor BPS

40.1

-0.6

2.1

57.58

45.2

Associated Gene:

Gene:

HIVEP1

Ensembl Gene ID:

ENSAPLG00000012713

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029632

63896637 - 64010475

113839

ENSAPLT00000036410

63896637 - 64009033

112397

ENSAPLT00000028877

63896637 - 63981621

84985

ENSAPLT00000033170

63896637 - 64009033

112397

ENSAPLT00000026926

63896637 - 63945799

49163

ENSAPLT00000031370

63896637 - 64009033

112397

ENSAPLT00000013234

63896637 - 63930407

33771

ENSAPLT00000029698

63896637 - 64010475

113839